Francisco Prosdocimi

Instituição:

Universidade Federal do Rio de Janeiro

Centro:

Centro de Ciências da Saúde

Unidade:

Instituto de Bioquímica Médica

Departamento:

Programa de Biologia Molecular e Biotecnologia

ORCID:

https://orcid.org/0000-0002-6761-3069


Formação:

  • Universidad Nacional Autónoma de Mexico

    | Pós-Doutorado | 2019 - Agora

  • Institut de Génétique et de Biologie Moléculaire et Cellulaire

    | Pós-Doutorado | 2008 - 2009

  • Universidade Federal de Minas Gerais

    | Pós-Doutorado | 2006 - 2007

  • Wellcome Trust Sanger Institute

    Doutorado Sanduíche | Aperfeiçoamento | 2005 - 2006

  • Universidade Federal de Minas Gerais

    Bioinformática | Doutorado | 2003 - 2006

  • Laboratório Nacional de Computação Científica

    Especialização Em Bioinformática | Especialização | 2002 - 2002

  • Universidade Federal de Minas Gerais

    Genética | Mestrado | 2002 - 2003

  • Universidade Federal de Minas Gerais

    Bacharelado Em Genética | Graduação | 1998 - 2001

  • Centro Federal de Educação Tecnológica de Minas Gerais

    | Ensino Profissional de nível técnico | 1994 - 1996
Laboratórios:
Nuvens de Palavras:
Artigos:

(82.61% artigos com DOI)

Titulo DOI Ano
Biosongs: enhancing cognition and emotional development through an active teaching-learning method in biosciences 10.34117/bjdv10n3-046 2024
A vida enquanto um processo químico auto-organizado de codificação 2024
Phylogenomics reconciles molecular data with the rich fossil record on the origin of living turtles 10.1016/j.ympev.2023.107773 2023
Origin of life: Drawing the big picture 10.1016/j.pbiomolbio.2023.04.005 2023
Decoding viruses: An alternative perspective on their history, origins and role in nature 10.1016/j.biosystems.2023.104960 2023
Repeated evolution of pollination syndromes in a highly diverse bromeliad lineage is correlated with shifts in life form and habitat 10.1093/botlinnean/boad015 2023
Entering the labyrinth: A hypothesis about the emergence of metabolism from protobiotic routes 10.1016/j.biosystems.2022.104751 2022
Prebiotic chemical refugia: multifaceted scenario for the formation of biomolecules in primitive Earth 10.1007/s12064-022-00377-7 2022
RNP-world: The ultimate essence of life is a ribonucleoprotein process 10.1590/1678-4685-gmb-2022-0127 2022
The complete organellar genomes of the entheogenic plant Psychotria viridis (Rubiaceae), a main component of the ayahuasca brew 10.7717/peerj.14114 2022
Phylogenomics and plastome evolution of a Brazilian mycoheterotrophic orchid, Pogoniopsis schenckii 10.1002/ajb2.16084 2022
Is it possible that cells have had more than one origin? 10.1016/j.biosystems.2021.104371 2021
Vírus: reinterpretando a história natural e sua importância ecológica 2021
Diversification of in the eastern Brazilian Shield: Evidence from complete mitochondrial genomes (Teleostei, Prochilodontidae) 10.1111/jzs.12475 2021
An overview of the Sixth International Conference on the Comparative Biology of Monocotyledons - Monocots VI - Natal, Brazil, 2018 10.1590/2175-7860202172035 2021
Life and living beings under the perspective of organic macrocodes 10.1016/j.biosystems.2021.104445 2021
Reproductive development and genetic structure of the mycoheterotrophic orchid Pogoniopsis schenckii Cogn. 10.1186/s12870-021-03118-y 2021
Organic Codes: A Unifying Concept for Life 10.1007/s10441-021-09422-2 2021
From FUCA to LUCA: : A Theoretical Analysis on the Common Descent of Gene Families 10.31080/ASMI.2020.03.0494 2020
MitoFinder: efficient automated large-scale extraction of mitogenomic data in target enrichment phylogenomics 10.1111/1755-0998.13160 2020
The Ancient History of Peptidyl Transferase Center Formation as Told by Conservation and Information Analyses 10.3390/life10080134 2020
The Theory of Chemical Symbiosis: A Margulian View for the Emergence of Biological Systems (Origin of Life) 10.1007/s10441-020-09388-7 2020
Genetic diversity and aquaculture conservation for a threatened Neotropical catfish 10.1590/1982-0224-2020-0028 2020
Dense sampling of bird diversity increases power of comparative genomics 10.1038/s41586-020-2873-9 2020
Accessible molecular phylogenomics at no cost: obtaining 14 new mitogenomes for the ant subfamily Pseudomyrmecinae from public data 10.7717/peerj.6271 2019
A neutral evolution test derived from a theoretical amino acid substitution model 10.1016/j.jtbi.2019.01.027 2019
Complete mitochondrial genomes for three lizards ( , and ): a contribution to mitochondrial phylogenomics of Iguanoidea 10.1080/23802359.2019.1574625 2019
Barcoding the Neotropical freshwater fish fauna using a new pair of universal COI primers with a discussion of primer dimers and M13 primer tails 10.1139/gen-2018-0145 2019
Complete plastid genome of (Verbenaceae) and phylogenomic analysis of Lamiales 10.1080/23802359.2019.1574675 2019
DNA barcoding of the rodent genus Oligoryzomys (Cricetidae: Sigmodontinae): mitogenomic-anchored database and identification of nuclear mitochondrial translocations (Numts) 10.1080/24701394.2019.1622692 2019
On the evolutionary origin of Neotropical cavefish Ancistrus cryptophthalmus (Siluriformes, Loricariidae) based on the mitogenome and genetic structure of cave and surface populations 10.1007/s10750-019-04033-y 2019
Viruses as a survival strategy in the armory of life 10.1007/s40656-019-0287-5 2019
Angiogenesis and evading immune destruction are the main related transcriptomic characteristics to the invasive process of oral tongue cancer 10.1038/s41598-017-19010-5 2018
Comparative mitogenomic analyses of Amazona parrots and Psittaciformes 10.1590/1678-4685-gmb-2017-0023 2018
Conceptual challenges for the emergence of the biological system: cell theory and self-replication 10.1016/j.mehy.2018.07.029 2018
mitoMaker: A Pipeline for Automatic Assembly and Annotation of Animal Mitochondria Using Raw NGS Data 2018
Copaifera langsdorffii Novel Putative Long Non-Coding RNAs: Interspecies Conservation Analysis in Adaptive Response to Different Biomes 10.3390/ncrna4040027 2018
Parrot Genomes and the Evolution of Heightened Longevity and Cognition 10.1016/j.cub.2018.10.050 2018
The heavy strand dilemma of vertebrate mitochondria on genome sequencing age: number of encoded genes or G-+-T content? 10.1080/24701394.2016.1275603 2017
Oxidation of monoterpenes in Protium heptaphyllum oleoresins 10.1016/j.phytochem.2017.01.013 2017
The complete mitochondrial genome of the subsocial cockroach and phylogenomic analyses of Blattodea mitogenomes suggest reclassification of superfamilies 10.1080/23802359.2017.1285207 2017
The complete mitochondrial genome of the surubim Pseudoplatystoma corruscans (Siluriformes: Pimelodidae) and mitochondrial phylogenomics of catfishes confirm monophyly of Siluriformes families 10.1007/s12686-017-0717-1 2017
A hybrid-hierarchical genome assembly strategy to sequence the invasive golden mussel Limnoperna fortunei 10.1093/gigascience/gix128 2017
Comparative genomics and phylogenomics of Trichostrongyloidea mitochondria reveal insights for molecular diagnosis and evolutionary biology of nematode worms 10.1016/j.genrep.2017.09.002 2017
In silico phylogenomics using complete genomes: a case study on the evolution of hominoids 10.1101/gr.203950.115 2016
Buds of the tree: the highway to the last universal common ancestor 10.1017/S147355041600029X 2016
Proceedings of the 4th World Conference on Research Integrity 10.1186/s41073-016-0012-9 2016
The complete mitochondrial genome of the threatened Neotropical catfish Lophiosilurus alexandri (Silurifomes: Pseudopimelodidae) and phylogenomic analysis indicate monophyly of Pimelodoidea 10.1590/1678-4685-GMB-2016-0007 2016
Symbiont modulates expression of specific gene categories in Angomonas deanei 2016
Metazoan Remaining Genes for Essential Amino Acid Biosynthesis: Sequence Conservation and Evolutionary Analyses 10.3390/nu7010001 2015
Complete chloroplast genome of the orchid Cattleya crispata (Orchidaceae:Laeliinae), a Neotropical rupiculous species 10.3109/19401736.2014.1003850 2015
Complete mitochondrial genome of the brown mussel (Bivalve, Mytilidae) 10.3109/19401736.2014.989502 2015
Complete mitochondrial genome of the versicoloured emerald hummingbird , a polymorphic species 10.3109/19401736.2015.1007352 2015
Teleological Thought in Gene Naming: The Quest for an Evolutionary-Based Taxonomy and Systematics for Genes 10.4172/2329-9002.1000152 2015
Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection 10.1073/pnas.1506226112 2015
The complete mitochondrial genome of the golden mussel limnoperna fortunei and comparative mitogenomics of mytilidae 10.1016/j.gene.2015.11.043 2015
The assembly and annotation of the complete Rufous-bellied thrush mitochondrial genome 10.3109/19401736.2015.1115855 2015
The complete mitochondrial genome of the southern purple-spotted gudgeon (Perciformes: Eleotridae) through pyrosequencing 10.3109/19401736.2014.895995 2014
The complete mitochondrial genome of the ruby-topaz hummingbird through Illumina sequencing 10.3109/19401736.2014.915533 2014
Gene Discovery through Transcriptome Sequencing for the Invasive Mussel Limnoperna fortunei 10.1371/journal.pone.0102973 2014
Whole-genome analyses resolve early branches in the tree of life of modern birds 10.1126/science.1253451 2014
New insights on the biology of swine respiratory tract mycoplasmas from a comparative genome analysis 10.1186/1471-2164-14-175 2013
The Genome of Anopheles darlingi, the main neotropical malaria vector 10.1093/nar/gkt484 2013
A directed approach for the identification of transcripts harbouring the spliced leader sequence and the effect of trans-splicing knockdown in Schistosoma mansoni 2013
Controversies in modern evolutionary biology: the imperative for error detection and quality control 10.1186/1471-2164-13-5 2012
Evidences for Viral Strain Selection in Late Stages of HIV Infection: An Analysis of Vpu Alleles 10.1007/s10930-011-9389-y 2012
Review Protein families, natural history and biotechnological aspects of spider silk 10.4238/2012.August.13.10 2012
The complete mitochondrial genome of two recently derived species of the fish genus Nannoperca (Perciformes, Percichthyidae) 10.1007/s11033-011-1034-5 2011
Spinning Gland Transcriptomics from Two Main Clades of Spiders (Order: Araneae) - Insights on Their Molecular, Anatomical and Behavioral Evolution 10.1371/journal.pone.0021634 2011
Sequence variations of Env signal peptide alleles in different clinical stages of HIV infection 10.1016/j.peptides.2011.07.014 2011
Amino acids biosynthesis and nitrogen assimilation pathways: a great genomic deletion during eukaryotes evolution 10.1186/1471-2164-12-S4-S2 2011
EvoluCode: Evolutionary Barcodes as a Unifying Framework for Multilevel Evolutionary Data 10.4137/EBO.S8814 2011
Survey of genome organization and gene content of Corynebacterium pseudotuberculosis 10.1016/j.micres.2009.05.009 2010
Initial Implementation of a comparative Data Analysis Ontology 2009
Essential amino acid usage and evolutionary nutrigenomics of eukaryotes - insights into the differential usage of amino acids in protein domains and extra-domains 10.4238/vol7-3X-Meeting002 2008
A procedure to recruit members to enlarge protein family databases - the building of UECOG (UniRef-Enriched COG Database) as a model 10.4238/vol7-3X-Meeting008 2008
A set of amino acids found to occur more frequently in human and fly than in plant and yeast proteomes consists of non-essential amino acids 10.1016/j.compbiomed.2006.02.003 2007
Sex-biased gene flow in African Americans but not in American Caucasians 2007
Effects of sample re-sequencing and trimming on the quality and size of assembled consensus sequences 2007
Efficient secondary database driven annotation using model organism sequences 2006
Learning comprehensible classification rules from gene expression data using genetic programming and biological ontologies 10.1142/9789812774118_0081 2006
Genetic algorithm for analysis of mutations in Parkinson's disease 10.1016/j.artmed.2004.11.006 2005
Diet as a pressure on the aminoacid content of proteomes. 10.1007/11532323_16 2005
Accessing optimal primer distance from insert 2005
Nucleic acid binding properties of SmZF1, a zinc finger protein of 10.1016/j.ijpara.2004.07.006 2004
Rede Mineira de Sequenciamento: O estudo do transcriptoma do parasita "Schistosoma mansoni". 2004
Ferramentas Bioinformáticas Aplicadas a Caracterização da Expressão Gênica. 2004
Sobre bioinformática, genoma e ciência 2004
Evaluation of window cohabitation of DNA sequencing errors and lowest PHRED quality values 2004
Bioinformática: manual do usuário 2003
DNA Sequences Base Calling by PHRED: Error Pattern Analysis 2003
Clustering of Schistosoma mansoni mRNA sequences and analysis of the most transcribed genes: implications in metabolism and biology of different developmental stages 10.1590/S0074-02762002000900014 2002
Eventos:

(0.00% eventos com DOI)

Titulo DOI Ano
Biocanções: a inteligência musical como ferramenta de memorização de conteúdos em biociências e desenvolvimento de afetos 2022
Systems biology of spider webs 2011
The influence of bad gene predictions to evolutionary analysis: a case study on the evolutionary fate of paralogs 2011
Evidences of positive selection in metazoan genes for essential amino acid pathways 2011
MOLECULAR, BEHAVIORAL AND ANATOMICAL SOPHISTICATION IN SPIDER WEBS: INSIGHTS FROM SPINNING GLAND RNA-SEQ EXPERIMENTS IN PRIMITIVE AND MODERN SPIDERS 2010
Next-generation sequencing analysis of two spider transcriptomes 2010
CDAO: a semantic web-ontology language to represent evolutionary biology data and analysis. 2009
CDAO: an evolutionary framework for comparative data analysis 2008
Clustering of Synthetic Homologs using Seed Linkage 2008
Enrichment of COG Database with 905355 sequences from 3414 genomes 2008
Human and fly protein-coding genes contain more stop resistant codons than random nucleotide sequences 2007
About a preference for stop-resistant codons in eukaryotic genomes 2007
The codon usage of Leucine, Serine and Arginine reveals evolutionary stability of proteomes and protein-coding genes 2007
Essential amino acid usage and evolutionary nutrigenomics of eukaryotes 2007
Ortholog-specific PSSM matrices improves the annotation of Corynebacterium genomes 2007
Favorable occurrence of beta string but not alpha helix in evolving proteins 2007
UECOG - Uniprot Enriched COG database 2007
Successful clustering of ortholog groups by Bidirectional Best Hit (BBH) using organisms modeled from a single ancestral via stepwise mutation 2006
How protein evolution measured by similarity change and stop codon incidence depends on the genetic code 2006
Bioinformatics analyses of Schistosoma mansoni ESTs generated from trans-spliced enriched cDNA libraries 2006
Learning Comprehensible Classification Rules from Gene Expression Data 2006
Learning Comprehensible Classification Rules from Gene Expression Data Using Genetic Programming and Biological Ontologies 2006
Inferring Gene Ontology category membership via gene expression and sequence similarity data analysis 2006
Most effective positioning of the sequencing primer 2005
The simulation of microsatellite haplotype evolution: comparison between genealogy made without and with bottleneck 2005
Tentative to produce high quality DNA molecules using the softwares PHRED, PHRAP and CAP3 2004
Does diet influence genome? -- a bioinformatics approach on the use of essential amino acids in proteins 2004
MGSim: um simulador de genealogias a partir de locos de microsatélites 2004
SAABs e TGFinder: novas ferramentas para o estudo da função de SmZF1, um possível fator de transcrição de 'Schistosoma mansoni' 2004
TGFinder: um algoritmo para encontrar genes alvos de fatores de transcrição e suas aplicações 2004
modEST: a simulator of cDNA library construction and EST sequencing 2004
Effects of the number of reads and trimming on quality and size of assembled consensi 2004
Evaluation of window cohabitation of DNA sequencing errors and lowest PHRED quality values 2004
TGFinder: automated identification of genes controlled by transcription factors using 'Drosophila melanogaster' as a model 2004
Effects of primer positioning and trimming algorithms in EST information retrieval 2003
Mining GenBank and dbEST Schistosoma mansoni sequences 2003
Candidate genes for the Late Onset Alzheimer disease in human chromosome 10 2003
Verificação dos valores de qualidade na vizinhança de erros de sequenciamento utilizando o algoritmo PHRED 2003
DNA Sequences Base Calling by PHRED: Error Pattern Analysis 2003
Drosophila melanogaster and Caenorhabditis elegans efficiently annotate Schistosoma mansoni sequences 2003
Comparison of sequence sets of 'Schistosoma mansoni' to 'Drosophila melanogaster' and 'Caenorhabditis elegans' and development of tools for selection of 'S. mansoni' clones for full length sequencing 2002
Bioinformatical analysis of 'Schistosoma mansoni' transcripts 2002
Avaliação comparativa da utilização dos softwares PHRAP e CAP3 no agrupamento de ESTs e CDSs de 'Schistosoma mansoni' 2001
Caracterização genética de populações de Curimbatá (Prochilodus lineatus) na bacia do rio Grande (MG), utilizando microsatélites 2001
Tentativa de descoberta de novos genes no cromossomo Y humano através da bioinformática 2001
Clustering, annotation and classification of Schistosoma mansoni sequences 2001
Isolamento e caracterização de marcadores de microsatélites em Prochilodus scrofa 2000
Comparações entre técnicas de purificação de DNA plasmidial 1999
Programa didático sobre síntese de proteínas e genética molecular 1999
Publicações:
Minha Rede: